PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01102.1_g00006.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ARF
Protein Properties Length: 696aa    MW: 77608.8 Da    PI: 6.4188
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01102.1_g00006.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.41.2e-22128232198
                              EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                              f+k+lt sd++++g +++ +++a+e+       +++    ++l+  d++g++W +++i+r++++r++lt+GW+ Fv+a++L +gD 
  Sme2.5_01102.1_g00006.1 128 FCKTLTASDTSTHGGFSVLRRHADEClppldmsQQP--PWQELVASDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSAKKLVAGDA 211
                              99****************************964333..4459******************************************** PP

                              EEEEE-.SS.SEE..EEEEE- CS
                       B3  80 vvFkld.gr.sefelvvkvfr 98 
                              ++F ++ ++ +++el+v+v+r
  Sme2.5_01102.1_g00006.1 212 FIFLRQvDEgENGELRVGVRR 232
                              ***9665667********997 PP

2Auxin_resp112.93e-37258340183
               Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                              a+ha+st++ F+v+Y+Pr+s+seF+v v+k+++a ++k+svGmRfkm+fe+e+++err+sGt+vgv d  ++ Wp+S+WrsLk
  Sme2.5_01102.1_g00006.1 258 ASHAISTGTLFSVFYKPRTSQSEFIVTVNKYLEARNHKLSVGMRFKMRFEGEEVPERRFSGTIVGVGDNPSSGWPDSEWRSLK 340
                              789******************************************************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.14E-41117261IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.9E-38125247IPR015300DNA-binding pseudobarrel domain
CDDcd100174.20E-20126232No hitNo description
SMARTSM010193.1E-19128234IPR003340B3 DNA binding domain
PROSITE profilePS5086310.941128234IPR003340B3 DNA binding domain
PfamPF023629.5E-21128232IPR003340B3 DNA binding domain
PfamPF065072.2E-35258340IPR010525Auxin response factor
PfamPF023092.0E-12570670IPR033389AUX/IAA domain
PROSITE profilePS5174526.711579672IPR000270PB1 domain
SuperFamilySSF542771.62E-12581656No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 696 aa     Download sequence    Send to blast
MAHVAANHFG GGAHQGASPT DALYKELWHA CAGPLVTVPR EGERVYYFPQ GHMEQLEAST  60
HQGVDRHLPS FNLPAKILCK VMNVQLRAEA ETDEVYAQIT LHPEPDQGEI TSPDPPLPEP  120
QKCTVHSFCK TLTASDTSTH GGFSVLRRHA DECLPPLDMS QQPPWQELVA SDLHGNEWHF  180
RHIFRGQPRR HLLTTGWSVF VSAKKLVAGD AFIFLRQVDE GENGELRVGV RRLMRQLNNI  240
PSSVISSHSM HLGVLATASH AISTGTLFSV FYKPRTSQSE FIVTVNKYLE ARNHKLSVGM  300
RFKMRFEGEE VPERRFSGTI VGVGDNPSSG WPDSEWRSLK VHWDEPSSIL RPDRVSPWDM  360
EPLVTTTPTN TQPPQRNKRA RPSVLPSPVQ ELPALGLKSF SCAVSLSLLI VHTFSLNNAN  420
FVGMWKSPVD SPSSFSYYDP SRGRDLYPSP KLSSAAKGLG QAENGSMPFS TKTMYWSSQS  480
ELCTESVAPA SEKRPANGCR LFGIELHHAT IDENSLVPMP LAVMEDHMPL AVMEDQPAPS  540
LYVDSDQNSE PSYPIPSVSC EPEKSSLRST HESQSKQIRS CTKVHMQGKA VGRAVDLTRL  600
YSYEDLLKKL EEMFEIEGEL CGSTKKWQVV YTDDEDDMMM VGDDPWHEFC SMVRKIYVYT  660
AEEAKRLSPK IKLPVDEMKP GKSVSDGATV INEEKA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A0.053633355Auxin response factor 1
4ldw_A0.053633355Auxin response factor 1
4ldw_B0.053633355Auxin response factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00097PBMTransfer from AT1G59750Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM0611540.0HM061154.1 Solanum lycopersicum auxin response factor 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001234871.20.0auxin response factor 1
SwissprotQ8L7G00.0ARFA_ARATH; Auxin response factor 1
TrEMBLK4B1N10.0K4B1N1_SOLLC; Auxin response factor
STRINGSolyc01g103050.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA58381923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.40.0auxin response factor 1